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Today we will meet CAMERA PORTAL! Enter the web site and request an account. The e-mail reply should be fairly quick. First of all, take some time to look at the resources available. This portal was conceived for metagenomic analysis and allows you to submit your data to a central server where they will be elaborated according to your instructions. (more…)

Welcome to the second day of our bioinformatics practicals. Start as usual with the "appello Name Surname" command so that we do our automatic head count. As a small update this morning the Proton run of our (meta)genomic sample finished giving us 5Gbp of data! Which resources? Your goal here is to be creative and think the (endless) possibilities you have to analyse the Ion Proton sequences. Referring to the small preview of the sequencing results use any online tool you wish (take some time to Google for rRNA classification, metagenomics data analysis and so and forth) to annotate those sequences. Critical thinking is important, as there is no "right tool" but a correct use of tools. As we said yesterday, BLAST is powerful and certainly would fit... as long as we…

Enjoy this! >ZG60V:01233:12955 ACTGGTTGTTGGGTCTTCACTGACTCAGTAACGAAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTACGG CCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCAGAAGCGGTGGACTGATGTGGTTAATTCGAT GCAACG >ZG60V:01233:06198 TGGGTGAAGTGAAACAATCTCAGTACCAGAGGAGGAGAAATCAAACAGGAGATTCCGTCAGTAGCGGCGA GCGAAAAGCGGATTAGGACAAACCCAATGGCTTGACATTGGGGGTTGTAGGACCATAAACGTGAGACTAA AGAAGATAGATGAAATACTTGGAAAAGTGTAGCATAGAAGGTGAAACTC >ZG60V:02846:01233 GGAGAAGGTATGCCCTAAGTAGGTGAAGTTGTACAAACGGAGCTGAACAGGGTTGCAAAAAAAATCGGGT GGCTGCGACTGTTTAATAAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCT GCCCGG >ZG60V:01233:08052 AGAGACGCCAGTTTCTGTGGAGCCGCCCTTGAAATACCACCCTGGTGTGTTTGAGGTTCTACCTTGGTCC GTCATCCGGATCGGGGACCGTGCATGGTAGGCAGTTTGACTGGGGCGGTCTCCTCCCAAAGTGTAACGGT GGAGCCAACTTCGAAAGAAGGCATTGCGTGGTGGGTAGTTTGACT